Search for tag: "species"

New Concepts for Defining and Characterizing the Bovine Microactome | Tim McAllister, PhD

Dr Tim McAllister, Principal Research Scientist at Agriculture and Agi-Food Canada talked about his comprehensive tracking of antimicrobial resistance (AMR) genes across systems, risk assessment, and…

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Microbial Communities on Host Surfaces: Resource Dynamics & Disease Impact | Max Aleman, Penn State

PhD Student and NSF Graduate Research Fellow, Max Aleman, presented his research focused on diseased mushroom microbial biomarker, as well as how pathogen-induced changes in plant metabolite…

From  Nichole Ginnan 0 likes 0 plays 0  

Microbiome Analysis as a Surveillance Tool to Detect and Track Plant Pathogen Threats | Veronica Roman-Reyna, PhD

Dr. Roman-Reyna, who started the lab at Penn State in Fall 2023, introduced her research goals and experience, including her vast work with different metagenomic sequencing methods and analyses. A…

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Heterotroph/Phototroph Interactions and Community Assembly in Biocrust Microbiomes | Ferran Garcia-Pichel, PhD, Arizona State Univ.

Dr. Garcia-Pichel speaks about his research on biocrusts and restoration efforts, include his discovery of a predatory bacterium that can kill cyanobacteria – the primary component of…

From  Nichole Ginnan 0 likes 5 plays 0  

Host-Microbe Interactions in the Anthropocene | Isabelle Laforest-Lapointe, PhD, Université de Sherbrooke

Dr. Laforest-Lapointe presents her work on plant and human microbial ecology, with a focus on spatial dynamics and microbiome assembly in early life. The One Health Microbiome Center at Penn State…

From  Nichole Ginnan 0 likes 10 plays 0  

Characterizing the Role of Bacteriophages in the Human Gut | Alejandro Reyes Muños, PhD, Universidad de los Andes, Colombia

Dr. Alejandro Reyes Muños, Profesor Asociado and Director of the Biología Computacional y Ecología Microbiana (BCEM) at the Universidad de los Andes in Colombia, presents his…

From  Nichole Ginnan 0 likes 7 plays 0  

Bacteria 3 - Bacterial Physiology and Pathogenesis

From  Chulapol Thanomsing 0 likes 7 plays 0  

Bacteria 1 - Bacteria and Their Structures

From  Chulapol Thanomsing 0 likes 13 plays 0  

The ocean as a treasure trove for novel taxa, enzymes and bioactive compounds | Shinichi Sunagawa, PhD ETH Zürich

Full title: The ocean as a treasure trove for novel taxa, enzymes and bioactive compounds. Dr. Shinichi Sunagawa, a professor at ETH Zürich presents his groundbreaking associated with the…

From  Nichole Ginnan 0 likes 1 plays 0  

Impact of airway Prevotella spp on lung infection resilience | Sarah Clark, PhD, Univ. of Colorado

Full title: The species-specific impact of airway Prevotella on infection resilience in the lung. Dr. Sarah Clark, an Assistant Professor of Otolaryngology – Head and Neck Surgery, talks…

From  Nichole Ginnan 0 likes 2 plays 0  

Erik Blair Foley-Defiore's Personal Meeting Room

Zoom Recording ID: 8575072405 UUID: d3vTbpGPRiqc2yTLt66L3A== Meeting Time: 2023-02-01 08:17:26pmGMT

From  Erik Foley-Defiore 0 likes 49 plays 0  

Population Dynamics of Phage and Bacteria: A New Mathematical Model | Joan Roughgarden, PhD, Stanford Univ. & Univ. of Hawaii

Dr. Joan Roughgarden talks about a new mathematical model developed to understand phage-bacteria dynamics. The follow-up Q&A is included in this video. Penn State’s Microbiome Center…

From  Nichole Ginnan 0 likes 3 plays 0  

Metatranscriptomics; Ready for Prime Time? | Greg Gloor, Ph.D., University of Western Ontario

Metatranscriptomics presents a wickedly hard problem when analyzed by high throughput sequencing because of the many moving parts: the abundance and occurrence of different species can vary along…

From  Microbiome Center_admin 0 likes 13 plays 0  

L08f: Getting Started With Orange 05: Hierarchical Clustering

Direct YouTube video link: https://youtu.be/dJ5z2SRwzgs Explanation of distance measurement between data points and a simple use of hierarchical clustering in the Orange workflow. License: GNU…

From  IST Learning Design 0 likes 9 plays 0  

L08c: Getting Started with Orange 02: Data Workflows

Direct YouTube video link: https://youtu.be/lb-x36xqJ-E Creating a data analysis workflow in Orange data mining software. License: GNU GPL + CC Music by: http://www.bensound.com/ Website:…

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The influence of Pseudomonas on the Agaricus bisporus fruiting body microbiome and the initiation of bacterial blotch disease

Max Aleman, a PhD candidate in Plant Pathology and Environmental Microbiology, shares a current research project on the metagenome in mushroom blotch disease. Penn State’s Microbiome Center…

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