Search for tag: "genes"
Characterizing bacterial genes with large-scale genetics | Adam Deutschbauer, PhD, LBNLDr. Deutschbauer talks about the he approaches and tools he uses for microbial functional genomics, including Barseq, with a focus on RB-TnSeq and over-expression experiments. The One Health…
From Nichole Ginnan
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New Concepts for Defining and Characterizing the Bovine Microactome | Tim McAllister, PhDDr Tim McAllister, Principal Research Scientist at Agriculture and Agi-Food Canada talked about his comprehensive tracking of antimicrobial resistance (AMR) genes across systems, risk assessment, and…
From Nichole Ginnan
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Biofilm Signaling and Microbiome-Host Specificity in Vibrio fischeri | Mark Mandel, PhD, (UW)Dr. Mark Mandel is an Associate Professor of Medical Microbiology and Immunology at the University of Wisconsin - Madison. Dr. Mandel talks about the molecular mechanisms controlling Vibrio fischeri,…
From Nichole Ginnan
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Microbiome Analysis as a Surveillance Tool to Detect and Track Plant Pathogen Threats | Veronica Roman-Reyna, PhDDr. Roman-Reyna, who started the lab at Penn State in Fall 2023, introduced her research goals and experience, including her vast work with different metagenomic sequencing methods and analyses. A…
From Nichole Ginnan
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Competition and Virulence in Pseudomonas syringae | Chad Fautt, PhD, Penn StateDr Fautt presents his work in silico work including building an online platform for phylogenetic placement and virulence gene prediction, tailocin genes evolution and insight from protein folding,…
From Nichole Ginnan
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The ocean as a treasure trove for novel taxa, enzymes and bioactive compounds | Shinichi Sunagawa, PhD ETH ZürichFull title: The ocean as a treasure trove for novel taxa, enzymes and bioactive compounds. Dr. Shinichi Sunagawa, a professor at ETH Zürich presents his groundbreaking associated with the…
From Nichole Ginnan
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Causes and consequences of gut microbiome variation | Federico Rey, PhD, UW-MadisonDr. Federico Rey talks about gut microbiome diversity and the impact of microbial community differences. Penn State’s Microbiome Center optimizes, accelerates, and disseminates long-lasting…
From Nichole Ginnan
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Metagenomics for the masses | David Roos, PhD & Daniel Beiting, PhD, Univ. of PennsylvaniaDrs. David Roos and Daniel Beiting talk about the development of an open-access data-mining platform for interrogating microbiome experiments. Learn more here: https://veupathdb.org/veupathdb/app …
From Nichole Ginnan
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Population Dynamics of Phage and Bacteria: A New Mathematical Model | Joan Roughgarden, PhD, Stanford Univ. & Univ. of HawaiiDr. Joan Roughgarden talks about a new mathematical model developed to understand phage-bacteria dynamics. The follow-up Q&A is included in this video. Penn State’s Microbiome Center…
From Nichole Ginnan
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Metatranscriptomics; Ready for Prime Time? | Greg Gloor, Ph.D., University of Western OntarioMetatranscriptomics presents a wickedly hard problem when analyzed by high throughput sequencing because of the many moving parts: the abundance and occurrence of different species can vary along…
From Microbiome Center_admin
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Coral symbionts as models for the impact of symbiosis on genome evolution of intracellular eukaryotes | Raul Gonzalez-Pech, Ph.D.Join us as Raul Gonzalez-Pech, an Eberly Postdoctoral Fellow, shares his past, current, and future research on the complicated genomic structures of microeukaryotes in coral reefs. Penn…
From Microbiome Center_admin
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