Search for tag: "genes"

Characterizing bacterial genes with large-scale genetics | Adam Deutschbauer, PhD, LBNL

Dr. Deutschbauer talks about the he approaches and tools he uses for microbial functional genomics, including Barseq, with a focus on RB-TnSeq and over-expression experiments. The One Health…

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New Concepts for Defining and Characterizing the Bovine Microactome | Tim McAllister, PhD

Dr Tim McAllister, Principal Research Scientist at Agriculture and Agi-Food Canada talked about his comprehensive tracking of antimicrobial resistance (AMR) genes across systems, risk assessment, and…

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Biofilm Signaling and Microbiome-Host Specificity in Vibrio fischeri | Mark Mandel, PhD, (UW)

Dr. Mark Mandel is an Associate Professor of Medical Microbiology and Immunology at the University of Wisconsin - Madison. Dr. Mandel talks about the molecular mechanisms controlling Vibrio fischeri,…

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Microbiome Analysis as a Surveillance Tool to Detect and Track Plant Pathogen Threats | Veronica Roman-Reyna, PhD

Dr. Roman-Reyna, who started the lab at Penn State in Fall 2023, introduced her research goals and experience, including her vast work with different metagenomic sequencing methods and analyses. A…

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Competition and Virulence in Pseudomonas syringae | Chad Fautt, PhD, Penn State

Dr Fautt presents his work in silico work including building an online platform for phylogenetic placement and virulence gene prediction, tailocin genes evolution and insight from protein folding,…

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Bacteria 3 - Bacterial Physiology and Pathogenesis

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The ocean as a treasure trove for novel taxa, enzymes and bioactive compounds | Shinichi Sunagawa, PhD ETH Zürich

Full title: The ocean as a treasure trove for novel taxa, enzymes and bioactive compounds. Dr. Shinichi Sunagawa, a professor at ETH Zürich presents his groundbreaking associated with the…

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Causes and consequences of gut microbiome variation | Federico Rey, PhD, UW-Madison

Dr. Federico Rey talks about gut microbiome diversity and the impact of microbial community differences. Penn State’s Microbiome Center optimizes, accelerates, and disseminates long-lasting…

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Metagenomics for the masses | David Roos, PhD & Daniel Beiting, PhD, Univ. of Pennsylvania

Drs. David Roos and Daniel Beiting talk about the development of an open-access data-mining platform for interrogating microbiome experiments. Learn more here: https://veupathdb.org/veupathdb/app …

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Population Dynamics of Phage and Bacteria: A New Mathematical Model | Joan Roughgarden, PhD, Stanford Univ. & Univ. of Hawaii

Dr. Joan Roughgarden talks about a new mathematical model developed to understand phage-bacteria dynamics. The follow-up Q&A is included in this video. Penn State’s Microbiome Center…

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Metatranscriptomics; Ready for Prime Time? | Greg Gloor, Ph.D., University of Western Ontario

Metatranscriptomics presents a wickedly hard problem when analyzed by high throughput sequencing because of the many moving parts: the abundance and occurrence of different species can vary along…

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Coral symbionts as models for the impact of symbiosis on genome evolution of intracellular eukaryotes | Raul Gonzalez-Pech, Ph.D.

Join us as Raul Gonzalez-Pech, an Eberly Postdoctoral Fellow, shares his past, current, and future research on the complicated genomic structures of microeukaryotes in coral reefs. Penn…

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2022 APR 01 Characterizing the molecular response of Agaricus bisporus to mushroom virus X infection

Eoin O'Connor, Penn State

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2021 SEPT 24 Understanding plant microbiomes for planetary health

Gabriele Berg, Graz University of Technology

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2019 SEPT 20 Know your enemy before you go to war: a story of bacterial blotch of mushroom

Samuel Martins, Penn State

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2020 AUG 08 Beyond the zooxanthellae, exploring the diversity of coral associated microeukaryotes

Javier del Campo, University of Miami

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